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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
43
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
215
October, 2019
205
May, 2021
200
May, 2022
193
August, 2021
184
February, 2023
161
June, 2019
148
May, 2020
110
May, 2019
90
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
66
February, 2021
59
September, 2020
47
September, 2018
47
September, 2023
40
May, 2024
36
July, 2019
35
December, 2018
January, 2019
24
February, 2018
23
October, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
May, 2023
13
March, 2020
11
September, 2017
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
192
Homo sapiens
Biosample type
130
tissue
35
in vitro differentiated cells
24
cell line
4
primary cell
Organ
130
kidney
26
liver
5
connective tissue
4
epithelium
1
adipose tissue
1
pancreas
Project
193
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
128
Katalin Susztak, Upenn
36
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
organ_slims!
limb
month_released!
January, 2019
files.file_type!
tsv
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
HEK293T
2
primary cell
hepatocyte
4
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