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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
16
ATAC-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
537
Transcription
43
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
677
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
227
October, 2019
223
August, 2017
182
June, 2019
149
February, 2023
111
May, 2019
97
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
21
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
540
bam
527
tsv
525
bigWig
89
txt
39
fastq
17
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
677
Homo sapiens
Biosample type
539
tissue
70
cell line
42
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
pancreas
8
kidney
8
skeleton
limb
3
liver
Project
638
AMP
39
HPAP
Genome assembly (visualization)
542
hg19
536
GRCh38
Lab
638
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
limb
pancreas
BIOSAMPLE
ASSAY
677 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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