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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
155
DNase-seq
ATAC-seq
81
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
155
DNA accessibility
81
DNA binding
Target of assay
46
histone
46
histone modification
38
narrow histone mark
31
control
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
243
August, 2021
241
May, 2020
225
October, 2019
186
June, 2019
168
July, 2018
123
May, 2022
113
May, 2019
102
February, 2023
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
22
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
424
bam
393
bigWig
205
bed narrowPeak
189
tsv
178
bigBed narrowPeak
155
bed bed3+
155
bed broadPeak
155
bigBed broadPeak
50
tagAlign
Organism
427
Homo sapiens
Biosample type
324
tissue
102
primary cell
1
cell line
Organ
196
liver
81
kidney
43
musculature of body
35
heart
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
382
AMP
45
T1D
Genome assembly (visualization)
385
GRCh38
370
hg19
Lab
382
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
29
inconsistent ontology term
organ_slims!
limb
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
427 results
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Clear Filters
total RNA-seq
DNase-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
kidney
13
brain
12
renal cortex interstitium
11
+ See 31 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 44 more…
cell line
HepG2
1
See all biosamples
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