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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ChIP-seq
5
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
335
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
706
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
222
October, 2019
205
February, 2023
200
May, 2022
178
June, 2019
168
July, 2018
100
July, 2019
91
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
22
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
327
bam
323
bigWig
315
bed narrowPeak
313
bigBed narrowPeak
265
fastq
71
bed broadPeak
67
tagAlign
65
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
Organism
346
Homo sapiens
Biosample type
262
cell line
72
tissue
12
primary cell
Organ
259
liver
76
brain
7
epithelium
6
connective tissue
5
pancreas
4
vasculature
2
blood vessel
Project
346
AMP
Genome assembly (visualization)
286
GRCh38
271
hg19
Lab
341
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
259
EndoC_BH1
3
tissue
layer of hippocampus
19
caudate nucleus
13
substantia nigra
13
cingulate gyrus
12
middle frontal area 46
12
+ See 2 more…
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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