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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
70
ChIP-seq
49
single cell RNA-seq
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
169
Transcription
70
DNA binding
7
DNA methylation
1
DNA accessibility
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
204
February, 2023
200
May, 2022
168
July, 2018
153
October, 2019
94
December, 2017
85
July, 2019
85
May, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
10
February, 2020
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
242
bam
235
bigWig
164
tsv
129
fastq
64
bed narrowPeak
64
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
247
Homo sapiens
Biosample type
137
tissue
61
cell line
49
primary cell
Organ
162
pancreas
50
liver
33
epithelium
15
blood
15
bodily fluid
8
spleen
2
connective tissue
Project
247
AMP
Genome assembly (visualization)
234
GRCh38
226
hg19
Lab
247
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
limb
brain
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
247 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic cell
4
pancreatic delta cell
4
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