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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1587
ChIP-seq
1509
total RNA-seq
519
ATAC-seq
360
single cell RNA-seq
144
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
55
pCHi-C
27
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
144
DNA accessibility
Date released
125
June, 2019
7
November, 2018
6
October, 2019
5
August, 2017
1
November, 2020
Available data
141
bam
141
bed narrowPeak
141
bigBed narrowPeak
141
bigWig
138
bed broadPeak
138
bigBed broadPeak
136
bed bed3+
10
fastq
Organism
144
Homo sapiens
Biosample type
115
tissue
26
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
limb
33
musculature of body
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
144
AMP
Genome assembly (visualization)
139
GRCh38
128
hg19
Lab
144
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
limb
brain
BIOSAMPLE
ASSAY
144 results
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Clear Filters
DNase-seq
tissue
heart
18
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 21 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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