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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
9
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
46
DNA accessibility
9
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
3
July, 2019
3
May, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
74
bam
62
bigWig
57
tsv
51
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
66
cell line
44
tissue
2
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
112
AMP-T2D consortium
organ_slims!
limb
pituitary gland
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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