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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
ATAC-seq
175
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1911
Transcription
1785
DNA binding
786
DNA accessibility
94
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
155
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
43
February, 2021
34
May, 2021
27
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
9
November, 2018
8
July, 2019
7
August, 2020
7
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
446
bed narrowPeak
343
bam
310
bigWig
204
bigBed narrowPeak
172
bed bed3+
171
bed broadPeak
169
bigBed broadPeak
100
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
785
Homo sapiens
Biosample type
424
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
spleen
1
pituitary gland
1
skin of body
Project
650
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
407
hg19
395
GRCh38
Lab
516
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
limb
spleen
BIOSAMPLE
ASSAY
786 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 47 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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