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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
1
October, 2019
Available data
2963
bam
2803
bigWig
1579
bed narrowPeak
1461
tsv
1193
fastq
928
bigBed narrowPeak
358
tagAlign
284
bed broadPeak
247
bigBed broadPeak
211
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
10
tissue
in vitro differentiated cells
4
primary cell
2
cell line
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
13
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
organ_slims!
limb
spleen
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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