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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
9
snATAC-seq
5
RRBS
5
total RNA-seq
2
ATAC-seq
2
Hi-C
2
small RNA-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
92
DNA binding
12
DNA accessibility
8
Transcription
5
DNA methylation
2
3D chromatin structure
Target of assay
51
transcription factor
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
11
control
10
RNA binding protein
10
chromatin remodeller
Date released
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
11
June, 2019
8
January, 2021
5
July, 2019
5
March, 2020
2
January, 2018
2
May, 2022
1
February, 2020
Available data
84
bigWig
77
bam
76
bed narrowPeak
63
bigBed narrowPeak
62
fastq
15
tagAlign
14
bed broadPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
bigBed broadPeak
1
txt
Organism
120
Homo sapiens
Biosample type
61
cell line
37
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
8
T1D
Genome assembly (visualization)
90
hg19
69
GRCh38
Lab
112
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
1
inconsistent control
organ_slims!
limb
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
snATAC-seq
RRBS
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
cell line
GM12878
60
1
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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