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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
32
DNA binding
8
Transcription
5
DNA methylation
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
10
June, 2019
5
July, 2019
5
March, 2020
1
February, 2020
1
May, 2022
Available data
27
bigWig
21
bed narrowPeak
16
bam
15
tagAlign
13
bed broadPeak
8
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
48
Homo sapiens
Biosample type
35
tissue
13
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
skin of body
Project
48
AMP
Genome assembly (visualization)
32
hg19
14
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
limb
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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