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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
292
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1220
Transcription
292
DNA binding
81
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
170
control
107
histone
107
histone modification
57
narrow histone mark
50
broad histone mark
19
transcription factor
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
217
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
70
October, 2019
65
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
24
November, 2017
22
February, 2020
21
May, 2019
20
November, 2019
19
April, 2020
15
May, 2023
14
April, 2019
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1770
bam
1654
bigWig
1069
tsv
bed narrowPeak
457
bigBed narrowPeak
362
fastq
238
tagAlign
177
bed broadPeak
167
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1758
Homo sapiens
Biosample type
1761
tissue
793
primary cell
257
in vitro differentiated cells
256
cell line
8
stem cell
Organ
534
connective tissue
475
adipose tissue
381
pancreas
248
liver
150
bone element
145
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1666
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
973
hg19
970
GRCh38
Lab
1551
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
21
missing controlled_by
organ_slims!
limb
target.investigated_as!
RNA binding protein
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
1761 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
49
31
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
1
kidney
49
6
64
11
6
1
1
bone element
84
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