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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
10
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
46
DNA accessibility
10
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
RNA binding protein
Date released
66
February, 2021
35
February, 2023
4
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
75
bam
63
bigWig
57
tsv
52
bed narrowPeak
6
tagAlign
4
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
113
Homo sapiens
Biosample type
66
cell line
45
tissue
2
primary cell
Organ
932
pancreas
733
liver
673
connective tissue
516
epithelium
485
adipose tissue
382
heart
351
kidney
267
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
106
GRCh38
71
hg19
Lab
113
AMP-T2D consortium
organ_slims!
limb
target.investigated_as!
RNA binding protein
month_released!
October, 2017
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
4
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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