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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
7
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
46
DNA accessibility
7
DNA binding
Target of assay
5
transcription factor
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
3
July, 2019
3
May, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
72
bam
64
bigWig
57
tsv
53
bed narrowPeak
5
bigBed narrowPeak
4
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
110
Homo sapiens
Biosample type
64
cell line
44
tissue
2
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
107
GRCh38
72
hg19
Lab
110
AMP-T2D consortium
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
110 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
3
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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