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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
578
ChIP-seq
Assay category
578
DNA binding
Target of assay
579
histone modification
578
histone
309
narrow histone mark
269
broad histone mark
170
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
125
October, 2019
123
August, 2017
83
May, 2019
70
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
12
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
473
bigWig
471
bed narrowPeak
417
bam
264
bigBed narrowPeak
186
tagAlign
73
fastq
35
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
572
Homo sapiens
Biosample type
578
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
184
brain
95
heart
73
pancreas
69
liver
54
blood vessel
54
vasculature
limb
33
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
576
AMP
2
T1D
Genome assembly (visualization)
446
GRCh38
389
hg19
Lab
543
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
limb
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
578 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
50
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
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