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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
15
small RNA-seq
12
RRBS
11
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
58
Transcription
23
DNA methylation
8
DNA accessibility
3D chromatin structure
Target of assay
3
control
Date released
584
February, 2021
357
August, 2017
309
May, 2021
282
October, 2019
279
August, 2021
194
February, 2023
190
June, 2019
162
July, 2018
160
May, 2022
139
May, 2020
117
May, 2019
91
November, 2017
89
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
38
November, 2019
37
March, 2020
35
November, 2018
34
December, 2018
27
December, 2017
25
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
75
bam
74
bigWig
58
tsv
20
bed bedMethyl
20
bigBed bedMethyl
7
bed narrowPeak
2
bigBed narrowPeak
Organism
89
Homo sapiens
Biosample type
65
tissue
24
primary cell
Organ
24
heart
16
connective tissue
15
brain
12
adipose tissue
10
epithelium
10
kidney
10
vasculature
9
blood vessel
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
1
limb
Project
89
AMP
Genome assembly (visualization)
77
hg19
72
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
liver
assay_slims!
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 23 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 14 more…
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