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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
15
small RNA-seq
14
RRBS
11
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
58
Transcription
25
DNA methylation
8
DNA accessibility
3D chromatin structure
Target of assay
3
control
Date released
712
February, 2021
399
May, 2021
357
August, 2017
302
October, 2019
282
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
91
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
August, 2020
5
December, 2019
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
75
bam
74
bigWig
58
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
2
bigBed narrowPeak
Organism
91
Homo sapiens
Biosample type
65
tissue
26
primary cell
Organ
25
heart
17
connective tissue
15
brain
12
adipose tissue
11
epithelium
11
kidney
10
vasculature
9
blood vessel
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
1
limb
Project
91
AMP
Genome assembly (visualization)
79
hg19
72
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
assay_slims!
3D chromatin structure
month_released!
August, 2020
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 15 more…
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