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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
40
total RNA-seq
31
ChIP-seq
15
small RNA-seq
14
RRBS
11
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
193
DNA accessibility
58
Transcription
31
DNA binding
25
DNA methylation
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
302
October, 2019
282
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
91
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
291
bam
282
bigWig
215
bed narrowPeak
210
bigBed narrowPeak
185
bed bed3+
185
bed broadPeak
185
bigBed broadPeak
58
tsv
22
bed bedMethyl
22
bigBed bedMethyl
Organism
307
Homo sapiens
Biosample type
228
tissue
79
primary cell
Organ
92
kidney
60
heart
49
musculature of body
45
brain
35
connective tissue
33
limb
31
epithelium
18
ureter
17
vasculature
14
blood vessel
13
adipose tissue
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
307
AMP
Genome assembly (visualization)
280
GRCh38
264
hg19
Lab
307
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
organ_slims!
liver
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
307 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 47 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
cardiac muscle cell
1
3
1
+ See 25 more…
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