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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
99
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
DNA binding
101
Transcription
30
DNA accessibility
3D chromatin structure
Target of assay
64
transcription factor
23
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
94
February, 2021
29
October, 2019
27
December, 2018
21
May, 2021
18
January, 2019
15
November, 2018
15
November, 2019
13
August, 2021
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
216
bam
189
bigWig
104
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
txt
Organism
255
Homo sapiens
Biosample type
2345
tissue
1060
primary cell
375
in vitro differentiated cells
259
cell line
10
stem cell
Organ
liver
90
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
248
AMP
9
T1D
2
community
Genome assembly (visualization)
198
hg19
195
GRCh38
Lab
243
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
91
inconsistent ontology term
1
inconsistent control
organ_slims!
liver
eye
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
19
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
H1-hESC
8
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