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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
57
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
6
total RNA-seq
Assay category
120
DNA binding
79
DNA accessibility
41
DNA methylation
40
Transcription
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
711
February, 2021
382
May, 2021
357
August, 2017
303
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
30
March, 2020
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
144
bam
134
zippedFastqFolder
115
bed narrowPeak
97
bigBed narrowPeak
97
bigWig
24
fastq
7
txt
1
bed bed3+
Organism
280
Homo sapiens
Biosample type
141
tissue
139
primary cell
Organ
106
pancreas
85
epithelium
50
blood vessel
50
vasculature
liver
28
brain
21
heart
9
musculature of body
7
limb
5
artery
5
kidney
Project
146
AMP
134
HPAP
Genome assembly (visualization)
116
hg19
96
GRCh38
Lab
134
Klaus Kaestner, Upenn
122
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
organ_slims!
liver
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
tissue
islet of Langerhans
18
6
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 8 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
kidney epithelial cell
5
pancreatic acinar cell
4
See all biosamples
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