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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
133
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
DNA binding
Target of assay
100
histone
100
histone modification
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
51
August, 2017
32
May, 2021
20
December, 2017
16
February, 2018
14
August, 2021
Available data
95
bam
77
fastq
66
bigWig
61
bed narrowPeak
28
tagAlign
15
bed bed3+
Organism
133
Homo sapiens
Biosample type
472
tissue
162
primary cell
133
in vitro differentiated cells
96
cell line
2
stem cell
Organ
51
connective tissue
14
embryo
14
epithelium
liver
2
pancreas
Project
133
AMP
Genome assembly (visualization)
71
GRCh38
70
hg19
Lab
106
AMP-T2D consortium
27
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
organ_slims!
liver
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
in vitro differentiated cells
adipocyte
51
embryonic stem cell
29
neural progenitor cell
14
pancreatic endoderm
12
definitive endodermal cell
6
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