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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1344
total RNA-seq
1279
ChIP-seq
508
ATAC-seq
362
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA methylation
5
DNA accessibility
Date released
16
July, 2019
6
August, 2017
1
November, 2018
1
October, 2019
Available data
17
bed bedMethyl
17
bigBed bedMethyl
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
5
fastq
1
tar
Organism
24
Homo sapiens
Biosample type
14
tissue
10
primary cell
Organ
7
epithelium
5
kidney
5
musculature of body
4
pancreas
3
brain
2
heart
liver
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
24
AMP
Genome assembly (visualization)
22
hg19
Lab
24
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
24 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 5 more…
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