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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1106
total RNA-seq
874
ChIP-seq
448
ATAC-seq
234
single cell RNA-seq
197
DNase-seq
87
RNA microarray
57
snATAC-seq
55
WGBS
53
pCHi-C
30
Hi-C
16
RRBS
15
small RNA-seq
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
16
DNA methylation
Date released
14
July, 2019
2
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
fastq
Organism
16
Homo sapiens
Biosample type
8
primary cell
8
tissue
Organ
6
epithelium
4
kidney
3
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
liver
1
pericardium
1
vasculature
Project
16
AMP
Genome assembly (visualization)
14
hg19
Lab
16
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
files.file_type!
fastq
BIOSAMPLE
ASSAY
16 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 3 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 2 more…
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