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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1125
ChIP-seq
1087
total RNA-seq
340
ATAC-seq
210
single cell RNA-seq
206
DNase-seq
87
RNA microarray
37
pCHi-C
23
Hi-C
23
WGBS
19
RRBS
15
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
19
DNA methylation
Date released
84
February, 2021
14
July, 2019
5
August, 2017
2
December, 2019
1
August, 2021
Available data
84
txt
17
bed bedMethyl
17
bigBed bedMethyl
3
fastq
2
tsv
Organism
105
Homo sapiens
Biosample type
97
tissue
9
primary cell
Organ
84
bone element
7
epithelium
6
kidney
5
musculature of body
2
brain
2
connective tissue
2
heart
liver
2
pancreas
1
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
106
AMP
Genome assembly (visualization)
17
hg19
Lab
106
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
2
audit script error
organ_slims!
liver
BIOSAMPLE
ASSAY
106 results
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RNA microarray
RRBS
tissue
bone element
84
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
+ See 6 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 4 more…
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