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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1304
total RNA-seq
1279
ChIP-seq
502
ATAC-seq
359
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
59
WGBS
54
pCHi-C
23
Hi-C
10
MeRIP-seq
5
GRO-seq
5
RRBS
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
59
DNA methylation
Date released
41
May, 2022
July, 2019
6
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
15
fastq
8
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
6
tsv
Organism
59
Homo sapiens
Biosample type
47
primary cell
12
tissue
Organ
51
pancreas
47
epithelium
6
adipose tissue
6
connective tissue
liver
2
spleen
Project
47
HPAP
12
AMP
Genome assembly (visualization)
8
GRCh38
Lab
47
Klaus Kaestner, Upenn
12
AMP-T2D consortium
organ_slims!
liver
month_released!
July, 2019
BIOSAMPLE
ASSAY
59 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
spleen
2
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