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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1319
ChIP-seq
1304
total RNA-seq
463
ATAC-seq
307
single cell RNA-seq
206
DNase-seq
87
RNA microarray
63
snATAC-seq
54
pCHi-C
23
Hi-C
18
WGBS
10
MeRIP-seq
5
GRO-seq
5
RRBS
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
18
DNA methylation
Date released
July, 2019
6
August, 2017
6
February, 2021
6
November, 2018
Available data
zippedFastqFolder
15
fastq
8
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
6
tsv
Organism
18
Homo sapiens
Biosample type
12
tissue
6
primary cell
Organ
10
pancreas
6
adipose tissue
6
connective tissue
6
epithelium
liver
2
spleen
Project
12
AMP
6
HPAP
Genome assembly (visualization)
8
GRCh38
Lab
12
AMP-T2D consortium
6
Klaus Kaestner, Upenn
organ_slims!
liver
month_released!
July, 2019
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
18 results
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Clear Filters
WGBS
tissue
adipose tissue
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
spleen
2
primary cell
pancreatic alpha cell
6
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