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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1311
ChIP-seq
759
total RNA-seq
481
ATAC-seq
342
single cell RNA-seq
206
DNase-seq
57
snATAC-seq
53
WGBS
53
pCHi-C
23
Hi-C
10
MeRIP-seq
5
GRO-seq
5
RRBS
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
53
DNA methylation
Date released
41
May, 2022
July, 2019
6
August, 2017
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
9
fastq
8
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
Organism
53
Homo sapiens
Biosample type
41
primary cell
12
tissue
Organ
45
pancreas
41
epithelium
6
adipose tissue
6
connective tissue
liver
2
spleen
Project
41
HPAP
12
AMP
Genome assembly (visualization)
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
12
AMP-T2D consortium
organ_slims!
liver
month_released!
July, 2019
February, 2021
BIOSAMPLE
ASSAY
53 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
adipose tissue
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
spleen
2
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