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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1344
total RNA-seq
1279
ChIP-seq
508
ATAC-seq
362
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA methylation
15
Transcription
Date released
29
July, 2019
5
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
15
bam
15
bigWig
15
tsv
3
fastq
Organism
34
Homo sapiens
Biosample type
23
tissue
11
primary cell
Organ
7
musculature of body
6
brain
6
epithelium
5
kidney
liver
4
connective tissue
4
pancreas
3
adipose tissue
3
heart
1
eye
1
pericardium
1
vasculature
Project
34
AMP
Genome assembly (visualization)
32
hg19
15
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
assay_title!
CRISPRi RNA-seq
BIOSAMPLE
ASSAY
34 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
brain
1
cerebellum (Hemisphere)
1
diencephalon
1
+ See 13 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 6 more…
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