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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
15
small RNA-seq
14
RRBS
5
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
58
Transcription
14
DNA methylation
7
DNA accessibility
3
3D chromatin structure
Target of assay
3
control
Date released
572
February, 2021
316
May, 2021
256
August, 2017
210
October, 2019
185
June, 2019
164
July, 2018
97
May, 2019
90
May, 2020
82
July, 2019
72
September, 2018
65
April, 2019
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
42
August, 2021
31
February, 2018
30
December, 2018
30
March, 2020
27
December, 2017
22
November, 2018
21
January, 2019
19
May, 2022
15
November, 2017
13
October, 2017
7
September, 2017
6
November, 2020
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
68
bigWig
65
bam
58
tsv
14
bed bedMethyl
14
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
82
Homo sapiens
Biosample type
53
tissue
29
primary cell
Organ
18
connective tissue
17
brain
17
heart
13
epithelium
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
liver
6
pancreas
5
musculature of body
3
artery
2
pericardium
1
eye
Project
82
AMP
Genome assembly (visualization)
82
hg19
72
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
frontal cortex
1
1
1
+ See 18 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 18 more…
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