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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
89
total RNA-seq
6
WGBS
5
RRBS
4
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
181
DNA binding
89
Transcription
11
DNA methylation
8
DNA accessibility
Target of assay
129
histone
129
histone modification
70
broad histone mark
59
narrow histone mark
31
control
21
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
686
February, 2021
299
October, 2019
289
August, 2017
267
May, 2021
242
August, 2021
216
June, 2019
189
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
53
March, 2020
49
April, 2018
47
September, 2023
35
November, 2018
34
December, 2018
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
December, 2017
3
December, 2019
3
June, 2018
1
August, 2022
Available data
206
bigWig
205
fastq
202
bam
89
tsv
81
bed narrowPeak
51
tagAlign
40
bed broadPeak
35
bigBed narrowPeak
23
bed bed3+
14
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
282
Homo sapiens
Biosample type
230
tissue
in vitro differentiated cells
59
primary cell
Organ
188
pancreas
57
adipose tissue
57
connective tissue
liver
29
epithelium
26
musculature of body
Project
289
AMP
Genome assembly (visualization)
207
hg19
181
GRCh38
Lab
289
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
9
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
289 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
white adipose tissue
12
+ See 2 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
See all biosamples
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