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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
381
ChIP-seq
341
total RNA-seq
227
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
11
Hi-C
9
RRBS
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
532
Transcription
381
DNA binding
315
DNA accessibility
57
DNA methylation
11
3D chromatin structure
Target of assay
254
histone
254
histone modification
131
broad histone mark
123
narrow histone mark
74
transcription factor
57
control
21
RNA binding protein
11
chromatin remodeller
7
recombinant protein
3
nucleotide modification
Date released
227
May, 2021
147
May, 2020
142
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
63
October, 2019
59
August, 2017
59
September, 2020
53
June, 2019
48
July, 2018
43
April, 2018
29
July, 2019
27
December, 2018
18
January, 2019
16
November, 2018
16
November, 2019
13
August, 2021
12
March, 2020
12
November, 2020
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
813
bam
792
bigWig
469
fastq
385
bed narrowPeak
369
tsv
169
bigBed narrowPeak
153
zippedFastqFolder
104
tagAlign
48
bed broadPeak
48
bigBed broadPeak
33
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
7
hic
5
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
1
txt
Organism
1331
Homo sapiens
Biosample type
2376
tissue
1074
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
485
epithelium
438
pancreas
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
39
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
795
AMP
324
HPAP
213
T1D
2
community
1
ITG
Genome assembly (visualization)
815
hg19
721
GRCh38
Lab
755
AMP-T2D consortium
324
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
145
inconsistent ontology term
31
audit script error
1
inconsistent control
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
BIOSAMPLE
ASSAY
1335 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
...and 2 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 90 more…
cell line
EndoC_BH1
15
33
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
+ See 13 more…
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