Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
21
ChIP-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
25
DNA accessibility
21
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
23
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
16
May, 2021
11
February, 2021
10
October, 2019
6
February, 2023
6
November, 2020
5
August, 2021
4
March, 2020
4
November, 2019
3
January, 2019
3
November, 2018
2
March, 2023
1
October, 2022
Available data
216
bam
bigWig
104
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
67
Homo sapiens
Biosample type
909
tissue
472
primary cell
134
in vitro differentiated cells
71
cell line
7
stem cell
Organ
liver
36
pancreas
29
epithelium
10
artery
10
blood vessel
10
heart
10
vasculature
7
kidney
6
blood
6
bodily fluid
1
mammary gland
Project
64
AMP
5
T1D
2
community
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
55
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
34
inconsistent ontology term
organ_slims!
liver
files.file_type!
bigWig
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
17
2
6
3
2
2
1
1
smooth muscle cell of the coronary artery
8
2
Panc1
7
GM12878
6
EndoC-BH1
1
1
+ See 10 more…
See all biosamples
Download