Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
21
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
98
DNA binding
23
Transcription
22
DNA accessibility
2
3D chromatin structure
Target of assay
59
transcription factor
20
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
February, 2021
30
October, 2019
27
December, 2018
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
13
August, 2021
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
122
bam
107
bigWig
83
bed narrowPeak
62
bigBed narrowPeak
60
fastq
26
tsv
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
163
Homo sapiens
Biosample type
1832
tissue
1026
primary cell
353
in vitro differentiated cells
167
cell line
10
stem cell
Organ
liver
66
pancreas
61
blood
61
bodily fluid
53
epithelium
19
kidney
8
embryo
1
mammary gland
Project
156
AMP
9
T1D
2
community
Genome assembly (visualization)
109
hg19
105
GRCh38
Lab
151
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
66
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
liver
month_released!
February, 2021
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
60
1
EndoC_BH1
15
7
19
6
3
2
1
2
1
Panc1
13
1
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
+ See 11 more…
See all biosamples
Download