Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
85
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
99
Transcription
85
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
64
transcription factor
19
histone
19
histone modification
11
RNA binding protein
10
chromatin remodeller
10
narrow histone mark
9
broad histone mark
7
recombinant protein
Date released
83
February, 2021
27
December, 2018
20
October, 2019
15
January, 2019
12
November, 2018
12
November, 2019
8
August, 2021
7
March, 2020
5
May, 2021
1
January, 2018
Available data
216
bam
190
bigWig
104
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
190
Homo sapiens
Biosample type
1467
tissue
602
primary cell
245
in vitro differentiated cells
190
cell line
3
stem cell
Organ
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
186
AMP
4
T1D
Genome assembly (visualization)
190
hg19
187
GRCh38
Lab
190
AMP-T2D consortium
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
190 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
4
GM12878
54
1
EndoC_BH1
33
13
2
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 HIF2a over-expression
1
2
RCC 7860 vector
1
2
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
See all biosamples
Download