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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
75
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
99
Transcription
75
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
64
transcription factor
19
histone
19
histone modification
11
RNA binding protein
chromatin remodeller
10
narrow histone mark
9
broad histone mark
7
recombinant protein
Date released
83
February, 2021
25
December, 2018
20
October, 2019
12
November, 2019
10
November, 2018
9
January, 2019
8
August, 2021
7
March, 2020
5
May, 2021
1
January, 2018
Available data
206
bam
180
bigWig
104
tsv
86
bed narrowPeak
52
bigBed narrowPeak
50
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
180
Homo sapiens
Biosample type
1507
tissue
601
primary cell
243
in vitro differentiated cells
180
cell line
3
stem cell
Organ
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
50
epithelium
45
blood
45
bodily fluid
12
kidney
8
embryo
Project
176
AMP
4
T1D
Genome assembly (visualization)
180
hg19
177
GRCh38
Lab
180
AMP-T2D consortium
Audit category:
58
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
liver
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
180 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
4
EndoC_BH1
33
13
2
GM12878
44
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 HIF2a over-expression
1
2
RCC 7860 vector
1
2
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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