Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
186
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
102
histone
102
histone modification
51
narrow histone mark
50
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
31
December, 2017
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
279
bam
248
bigWig
135
tsv
130
fastq
120
bed narrowPeak
40
tagAlign
28
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
387
Homo sapiens
Biosample type
2376
tissue
1074
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
98
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
387
AMP
2
community
Genome assembly (visualization)
286
hg19
254
GRCh38
5
hg18
Lab
333
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
116
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
389 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 30 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download