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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
total RNA-seq
752
ChIP-seq
239
ATAC-seq
174
DNase-seq
173
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
pCHi-C
23
WGBS
14
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
752
DNA binding
445
DNA accessibility
33
DNA methylation
14
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
232
October, 2019
230
August, 2017
229
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
18
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1619
bam
1507
bigWig
903
tsv
871
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
bedpe
1
tagAlign bed3+
Organism
2382
Homo sapiens
Biosample type
2391
tissue
1057
primary cell
374
in vitro differentiated cells
257
cell line
6
stem cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
81
musculature of body
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2295
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1621
GRCh38
1486
hg19
Lab
2081
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
files.file_type!
bedpe
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
2391 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
2
1
1
4
adipose tissue
382
2
3
3
kidney
49
27
75
13
64
6
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
4
1
1
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