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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
total RNA-seq
380
ChIP-seq
237
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
380
DNA binding
265
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
221
histone
221
histone modification
160
narrow histone mark
141
control
61
broad histone mark
20
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
214
August, 2017
189
October, 2019
120
July, 2018
95
February, 2023
67
July, 2019
47
September, 2023
40
May, 2021
40
November, 2019
37
March, 2020
29
October, 2018
26
May, 2022
25
November, 2017
24
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1619
bam
1467
bigWig
922
tsv
831
bed narrowPeak
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1861
Homo sapiens
Biosample type
1864
tissue
967
primary cell
376
in vitro differentiated cells
199
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
liver
212
kidney
185
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1767
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1075
GRCh38
1043
hg19
Lab
1592
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
organ_slims!
liver
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1864 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
7
4
3
1
4
adipose tissue
382
1
2
1
3
kidney
49
9
75
64
6
1
1
bone element
84
bone tissue
58
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