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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
145
total RNA-seq
100
single cell RNA-seq
83
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
247
Transcription
238
DNA binding
111
DNA accessibility
Target of assay
200
histone
200
histone modification
101
narrow histone mark
99
broad histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
53
June, 2019
48
July, 2018
43
April, 2018
30
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
602
bigWig
597
bam
409
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
597
Homo sapiens
Biosample type
1619
tissue
597
primary cell
276
in vitro differentiated cells
216
cell line
3
stem cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
417
AMP
180
T1D
Genome assembly (visualization)
563
hg19
514
GRCh38
Lab
417
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
BIOSAMPLE
ASSAY
597 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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