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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
99
total RNA-seq
9
ATAC-seq
2
DNase-seq
Assay category
106
DNA binding
99
Transcription
11
DNA accessibility
Target of assay
64
transcription factor
20
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
Date released
94
February, 2021
29
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
216
bam
190
bigWig
104
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
0
bed bed3
Organism
216
Homo sapiens
Biosample type
1624
tissue
597
primary cell
281
in vitro differentiated cells
216
cell line
3
stem cell
Organ
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
212
AMP
4
T1D
Genome assembly (visualization)
195
GRCh38
195
hg19
Lab
216
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
organ_slims!
liver
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
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