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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
110
total RNA-seq
61
ATAC-seq
30
single cell RNA-seq
12
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
150
DNA binding
142
Transcription
73
DNA accessibility
Target of assay
137
histone
137
histone modification
69
broad histone mark
68
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
34
June, 2019
29
August, 2017
15
July, 2018
13
July, 2019
11
September, 2018
10
April, 2018
6
November, 2020
3
February, 2021
3
November, 2017
2
June, 2018
1
October, 2019
Available data
381
bigWig
366
bam
188
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
47
bigBed narrowPeak
26
bed broadPeak
26
bigBed broadPeak
15
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
366
Homo sapiens
Biosample type
1619
tissue
366
primary cell
267
in vitro differentiated cells
165
cell line
3
stem cell
Organ
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
186
AMP
180
T1D
Genome assembly (visualization)
359
hg19
309
GRCh38
Lab
186
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
liver
epithelium
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic endocrine cell
23
skeletal muscle myoblast
15
1
2
skeletal muscle satellite cell
8
1
1
osteoblast
5
2
1
1
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