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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
9
DNase-seq
4
total RNA-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
91
DNA binding
12
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
46
October, 2019
45
May, 2019
6
July, 2019
6
November, 2017
5
June, 2019
1
March, 2020
Available data
109
bam
90
bigWig
80
bed narrowPeak
78
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
tsv
10
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
hdf5
1
tar
Organism
109
Homo sapiens
Biosample type
79
tissue
30
primary cell
Organ
689
pancreas
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
109
AMP
Genome assembly (visualization)
87
hg19
84
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
liver
heart
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
tibial artery
23
2
1
thoracic aorta
16
2
1
ascending aorta
16
1
1
aorta
13
1
2
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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