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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
54
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
26
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
39
August, 2017
12
November, 2017
9
October, 2019
6
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2708
bam
2503
bigWig
1426
tsv
1333
bed narrowPeak
890
fastq
681
bigBed narrowPeak
310
tagAlign
259
bed bed3+
257
bed broadPeak
221
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
252
Homo sapiens
Biosample type
209
tissue
46
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
257
AMP
Genome assembly (visualization)
233
hg19
231
GRCh38
Lab
255
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
organ_slims!
liver
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
257 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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