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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
DNase-seq
54
ChIP-seq
2
ATAC-seq
Assay category
185
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
26
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
167
June, 2019
39
August, 2017
12
November, 2017
9
October, 2019
6
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2690
bam
2525
bigWig
1426
tsv
1355
bed narrowPeak
890
fastq
663
bigBed narrowPeak
310
tagAlign
241
bed bed3+
239
bed broadPeak
203
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
234
Homo sapiens
Biosample type
191
tissue
46
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
239
AMP
Genome assembly (visualization)
215
hg19
213
GRCh38
Lab
237
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
organ_slims!
liver
ureter
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
239 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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