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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
56
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
56
DNA binding
Target of assay
51
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
41
August, 2017
12
November, 2017
9
October, 2019
6
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2711
bam
2547
bigWig
tsv
1376
bed narrowPeak
893
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
253
Homo sapiens
Biosample type
210
tissue
47
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
235
hg19
233
GRCh38
Lab
257
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
organ_slims!
liver
files.file_type!
tsv
BIOSAMPLE
ASSAY
259 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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