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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
DNase-seq
21
ChIP-seq
3
Hi-C
Assay category
26
DNA accessibility
21
DNA binding
3
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
22
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
3
July, 2019
1
November, 2020
Available data
602
bigWig
597
bam
409
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
50
Homo sapiens
Biosample type
210
tissue
50
primary cell
2
cell line
1
in vitro differentiated cells
Organ
24
epithelium
14
brain
14
vasculature
10
blood vessel
10
kidney
7
connective tissue
4
vein
3
heart
liver
1
eye
1
musculature of body
Project
50
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
50
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
50 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
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