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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
17
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
17
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
185
June, 2019
August, 2017
12
November, 2017
9
October, 2019
6
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2455
bam
2293
bigWig
1337
tsv
1252
bed narrowPeak
648
bigBed narrowPeak
634
fastq
247
tagAlign
230
bed bed3+
218
bed broadPeak
207
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
218
Homo sapiens
Biosample type
184
tissue
33
primary cell
1
cell line
Organ
78
kidney
liver
47
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
218
AMP
Genome assembly (visualization)
214
GRCh38
194
hg19
Lab
216
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
organ_slims!
liver
month_released!
August, 2017
BIOSAMPLE
ASSAY
218 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 41 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 15 more…
cell line
Panc1
1
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