Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
DNase-seq
39
ChIP-seq
2
ATAC-seq
Assay category
163
DNA accessibility
39
DNA binding
Target of assay
37
histone
37
histone modification
22
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
151
June, 2019
41
August, 2017
4
November, 2018
3
October, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2292
bam
2181
bigWig
1332
tsv
1047
bed narrowPeak
872
fastq
481
bigBed narrowPeak
217
bed bed3+
202
bed broadPeak
188
tagAlign
174
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
bedpe bed3+
18
hic
10
bed bed3
7
bed bedgraph
7
csv
3
cool
2
ibed
1
bedpe
1
hdf5
Organism
196
Homo sapiens
Biosample type
169
tissue
31
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
202
AMP
Genome assembly (visualization)
189
hg19
179
GRCh38
Lab
200
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent assembly
organ_slims!
liver
blood vessel
brain
BIOSAMPLE
ASSAY
202 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 24 more…
primary cell
skeletal muscle myoblast
1
13
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 9 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download