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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
DNase-seq
54
ChIP-seq
2
ATAC-seq
Assay category
200
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
26
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
41
August, 2017
12
November, 2017
6
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
November, 2020
Available data
2685
bam
2527
bigWig
1422
tsv
1361
bed narrowPeak
893
fastq
670
bigBed narrowPeak
312
tagAlign
257
bed bed3+
254
bed broadPeak
217
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
20
bedpe bed3+
19
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
248
Homo sapiens
Biosample type
210
tissue
42
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
vein
3
adipose tissue
2
nerve
1
spleen
Project
254
AMP
Genome assembly (visualization)
230
GRCh38
230
hg19
Lab
252
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
organ_slims!
liver
vein
month_released!
November, 2020
BIOSAMPLE
ASSAY
254 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 14 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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