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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
5
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
5
DNA binding
Target of assay
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
7
October, 2019
6
November, 2018
4
August, 2017
3
November, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2006
bam
1756
bigWig
1426
tsv
708
fastq
601
bed narrowPeak
328
bigBed narrowPeak
238
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
49
tagAlign
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
208
Homo sapiens
Biosample type
175
tissue
31
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
208
AMP
Genome assembly (visualization)
205
GRCh38
184
hg19
Lab
206
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
208 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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